The following software programs and resources are available for image collection and/or analysis:
- cellSens (online video tutorials)
- DigitalMicrograph (program download)
- Fiji
- ICY and plug-ins
- ImageJ and plug-ins (including LSM 510 plug-in)
- Image-Pro Premier 3D
- IPLab (with InFocus and InFocus Advanced Deconvolution)
- Leica confocal software (plus extra off-line copy)
- Leica LCS Lite [executable]
- newCAST (Computer-assisted Stereological Toolbox)
- Neurolucida 360 (Learning Center access, guides, video tutorials, and webinars)
- NIH Image
- Nikon NIS-Elements (plus extra off-line copy)
- Nikon NIS-Elements Viewer
- Adobe Photoshop
- Slidebook
- Stereo Investigator (user guide, stereology.info, video tutorials, and webinars)
- Volocity (Visualization, Classification, Restoration/Deconvolution)
- Zeiss Axiovision
- Zeiss confocal LSM software (plus extra off-line copy)
- Zeiss LSM Image Browser
- Zeiss Zen (plus extra off-line copy) and Zen Lite
- Zeiss Zen Lite